Publications

Articles

International Journal Articles: 5

2018

- Andreia Teixeira and Francisco Fernandes and A. P. Francisco, SpliceTAPyR - An Efficient Method For Transcriptome Alignment, article in International Journal of Foundations of Computer Science vol. 29 (8) pp. 1297-1310, Dec. 2018, World Scientific Publishing Co [Article] [DOI Article link] [bibTex] [PDF]
- Andreia Teixeira and Pedro T. Monteiro and João A. Carriço and Francisco C. Santos and A. P. Francisco, Large-Scale Simulations of Bacterial Populations over Complex Networks, article in Journal of Computational Biology, May. 2018 [bibTex]
- Luís M. S. Russo and Andreia Teixeira and A. P. Francisco, Linking and Cutting Spanning Trees, article in Algorithms vol. 11 (4) pp. 53, Apr. 2018, MDPI [DOI Article link] [bibTex]
- Miguel Monteiro and Ana Catarina Fonseca and Ana T. Freitas and Teresa Pinho e Melo and A. P. Francisco and José M. Ferro and Arlindo L. Oliveira, Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients, article in ACM/IEEE Transactions cn Computational Biology and Bioinformatics vol. 15 (6) pp. 1953-1959, Mar. 2018 [DOI Article link] [bibTex] [PDF]
- João Carriço and Maxime Crochemore and A. P. Francisco and Solon Pissis and Bruno Ribeiro‑Gonçalves and Cátia Vaz, Fast phylogenetic inference from typing data, article in Algorithms for Molecular Biology vol. 13 (4), Feb. 2018, BioMed Central [DOI Article link] [bibTex]

International Conferences: 7

2017

- Miguel E. Coimbra and Mennan Selimi and A. P. Francisco and Felix Freitag and Luís Veiga, Gelly-Scheduling: Distributed Graph Processing for Service Placement in Community Networks, presented at 33rd ACM/SIGAPP Symposium On Applied Computing (SAC 2018), Nov. 2017 [bibTex]
- Andreia Teixeira and Pedro T. Monteiro and João Carriço and Francisco C. Santos and A. P. Francisco, Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks, presented at International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP'17), Sep. 2017 [DOI Article link] [bibTex]
- Miguel Monteiro and Ana Catarina Fonseca and Ana T. Freitas and Teresa Pinho e Melo and A. P. Francisco and Jose M Ferro and Arlindo L. Oliveira, Improving the Prediction of Functional Outcome in Ischemic Stroke Patients, presented at BIOKDD 2017, Aug. 2017 [bibTex] [PDF]
- Bruno Miguel das Neves Dantas and Calmenelias Pino Fleitas and Alexandre Teixeira de Almeida and João Nuno Gonçalves Forja and A. P. Francisco and José Simão and Cátia Vaz, NGSPipes: Fostering Reproducibility and Scalability in Biosciences, presented at 8th International Conference on Bioinformatics, Computational Biology, and Health Informatics, Aug. 2017 [bibTex]
- Maxime Crochemore and A. P. Francisco and Solon P. Pissis and Cátia Vaz, Towards distance-based phylogenetic inference in average-case linear-time, presented at WABI, Aug. 2017 [DOI Article link] [bibTex]
- Andreia Teixeira and Pedro T. Monteiro and João Carriço and Francisco C. Santos and A. P. Francisco, Using Spark and MapReduce to Parallelize Large Scale Simulations Over Host Contact Networks, Jul. 2017 [bibTex]
- Andreia Teixeira and Francisco C. Santos and A. P. Francisco, Emergence of social balance in signed networks, presented at CompleNet 2017, Mar. 2017 [DOI Article link] [bibTex]

Reports

Technical Reports: 1

2017

- Miguel E. Coimbra and A. P. Francisco and Luís Veiga, Gelly-Scheduling: Distributed Graph Processing for Network Service Placement, INESC-ID Tec. Rep. 4/2017, Feb. 2017 [bibTex]