Publications
Filter Publications: 2017 - 2019
Books
Books: 2
2017
- Mentes Digitais: A Ciência Redefinindo a Humanidade, book, Nov. 2017, IST Press [bibTex]
, - The Digital Mind: How Science is Redefining Humanity, book, Mar. 2017, MIT Press [bibTex]
, Book Chapters: 4
2018
- Evaluation of XIS-Reverse, a Model-Driven Reverse Engineering Approach for Legacy Information Systems, chapter of Model-Driven Engineering and Software Development, Jul. 2018, Springer [bibTex]
, - Informed Decision-Making with Enterprise Dynamic Systems Control, Systems and Software Engineering, chapter of Encyclopedia of Information Science and Technology, Jan. 2018, IGI Global [bibTex]
, - Challenges of Meta Access Control Model Enforcement to an Increased Interoperability, chapter of Encyclopedia of Information Science and Technology, fourth edition, Systems and Software Engineering, Jan. 2018, IGI Global [bibTex]
, 2017
- Information Overload in augmented reality the outdoor sports environments, chapter of Information and Communication Overload in the Digital Age, Aug. 2017, IGI Global [bibTex]
, Articles
International Journal Articles: 25
2018
- SpliceTAPyR - An Efficient Method For Transcriptome Alignment, article in International Journal of Foundations of Computer Science vol. 29 (8) pp. 1297-1310, Dec. 2018, World Scientific Publishing Co [Article] [DOI Article link] [bibTex] [PDF]
, - On-demand big data integration, article in Distributed and Parallel Databases pp. 1-23, Sep. 2018, Springer [DOI Article link] [bibTex]
, - Estimating attractor reachability in asynchronous logical models, article in Frontiers in Physiology, Jul. 2018 [DOI Article link] [bibTex]
, - Triclustering Algorithms for Three-Dimensional Data Analysis: A Comprehensive Survey, article in ACM Computing Surveys (CSUR), Jun. 2018 [bibTex]
, - Can HVAC really learn from users? A simulation-based study on the effectiveness of voting for comfort and energy use optimisation, article in Sustainable Cities and Society, May. 2018, Elsevier [Article] [DOI Article link] [bibTex] [PDF]
, - Large-Scale Simulations of Bacterial Populations over Complex Networks, article in Journal of Computational Biology, May. 2018 [bibTex]
, - Deep neural models for ICD-10 coding of death certificates and autopsy reports in free-text, article in Journal of Biomedical Informatics vol. 80 pp. 64-77, Apr. 2018, Elsevier [Article] [DOI Article link] [bibTex]
, - Linking and Cutting Spanning Trees, article in Algorithms vol. 11 (4) pp. 53, Apr. 2018, MDPI [DOI Article link] [bibTex]
, - Using Machine Learning to Improve the Prediction of Functional Outcome in Ischemic Stroke Patients, article in ACM/IEEE Transactions cn Computational Biology and Bioinformatics vol. 15 (6) pp. 1953-1959, Mar. 2018 [DOI Article link] [bibTex] [PDF]
, - Fast phylogenetic inference from typing data, article in Algorithms for Molecular Biology vol. 13 (4), Feb. 2018, BioMed Central [DOI Article link] [bibTex]
, - Usability Evaluation of the Domain Specific Language for Spatial Simulation Scenarios, article in Cogent Engineering vol. 5 (1), Feb. 2018, Cogent [DOI Article link] [bibTex]
, - Using Markov Theory to Deliver Informed Decisions in Partially Observable Business Processes Operation, article in International Journal of Operations Research and Information Systems (IJORIS) vol. 9 (2) pp. 53--72, Jan. 2018, IGI Global [DOI Article link] [bibTex]
, 2017
- BIMSL: A Generic Approach to the Integration of Building Information Models with Real-time Sensor Data, article in Automation in Construction, to appear on 2017, Elsevier [bibTex] [PDF]
, - Comparative assessment of low-complexity models to predict electricity consumption in an institutional building: Linear regression vs. fuzzy modeling vs. neural networks , article in Energy and Buildings vol. 146 pp. 141--151, to appear on 2017, Elsevier [DOI Article link] [bibTex]
, - Energy behaviour engagement in smart urban environments, article in Energy Procedia vol. 142 pp. 2080-2088, Dec. 2017, Elsevier [Article] [DOI Article link] [bibTex]
, - Virtual Reality as Integration Environments for Facilities Management: Application and Users Perception, article in Engineering, Construction and Architectural Management Journal, to appear on 2017 [bibTex]
, - BSig: Evaluating the Statistical Significance of Biclustering Solutions, article in Data Mining and Knowledge Discovery vol. 32 (1) pp. 124–161, Oct. 2017, Springer [DOI Article link] [bibTex]
, - Toponym Matching through Deep Neural Networks, article in International Journal of Geographical Information Science vol. 32 (2) pp. 324--348, Oct. 2017 [Article] [DOI Article link] [bibTex]
, - The evolution of web archiving, article in International Journal on Digital Libraries vol. 18 (18) pp. 191-205, Sep. 2017, Springer [Article] [DOI Article link] [bibTex]
, - Are You Eating Right? Ask Your Genes: Developing a Value Proposition in Nutrigenetics, article in Annals of Nutrition and Metabolism vol. 71 pp. 38, Jul. 2017 [DOI Article link] [bibTex]
, - Biogeographical distribution analysis of hydrocarbon degrading and biosurfactant producing genes suggests that near equatorial biomes have higher abundance of genes with potential for bioremediation, article in BMC Microbiology vol. 17 pp. 168, Jul. 2017, Biomed Central [DOI Article link] [bibTex]
, - SECOL: a semantic environment based on social media to support organisational learning, article in Behaviour \& Information Technology vol. 36 (4) pp. 364-389, Jun. 2017, Taylor&Francis [DOI Article link] [bibTex]
, - A General Multiview Framework for Assessing the Quality of Collaboratively Created Content on Web 2.0, article in Journal of the American Society for Information Science and Technology vol. 68 (2) pp. 286--308, Feb. 2017 [DOI Article link] [bibTex]
, - BicPAMS: software for biological data analysis with pattern-based biclustering, article in BMC Bioinformatics vol. 18 (82), Feb. 2017 [DOI Article link] [bibTex]
, - Computational Approach to the Discovery of Phytochemical Molecules with Therapeutic Potential Targets to the PKCZ protein, article in Letters in Drug Design & Discovery vol. 14 pp. 1-12, Jan. 2017, Bentham Science [DOI Article link] [bibTex] [PDF]
, International Conferences: 51
2018
- Conditional Random Fields as Recurrent Neural Networks for 3D Medical Imaging Segmentation, presented at Medical Imaging meets NeurIPS Workshop, Dec. 2018 [bibTex] [PDF]
, - FTR-18: Collecting rumours on football transfer news, presented at 2nd International Workshop on Rumours and Deception in Social Media (RDSM), Nov. 2018 [bibTex] [PDF]
, - A Collaborative Platform for Better Managing Technical Documentation: An analysis from a Requirements Engineering Perspective, presented at QUATIC’2018, Sep. 2018 [bibTex]
, - ConnectionLens: Finding Connections Across Heterogeneous Data Sources (demo), presented at International Conference on Very Large Databases (VLDB), Aug. 2018 [bibTex]
, - Towards a Catalogue of Reusable Security Requirements, Risks and Vulnerabilities, presented at International Conference on Information Systems Development (ISD'2018), Aug. 2018 [bibTex]
, - A Catalogue of Reusable Security Concerns: Focus on Privacy Threats, presented at IEEE Conference on Business Informatics'2018, Jul. 2018 [bibTex]
, - Using Fuzzy Fingerprints for Cyberbullying Detection in Social Networks, presented at 2018 IEEE International Conference on Fuzzy Systems (FUZZ-IEEE), Jul. 2018 [bibTex] [PDF]
, - A Viewpoint for Representing Costs in Enterprise Architectures, presented at 20th IEEE Conference on Business Informatics, Jun. 2018 [bibTex]
, - Conceptualizing DEMO business transactions with Blockchain Hyperledger Composer to enable Traceability and Control, presented at EEWC, Jun. 2018 [bibTex]
, - Order-preserving Pattern Matching Indeterminate Strings, presented at Symposium on Combinatorial Pattern Matching (CPM), Jun. 2018 [bibTex]
, - Tag-Based User Fuzzy Fingerprints for Recommender Systems, presented at IPMU2018 - 17th International Conference on Information Processing and Management of Uncertainty in Knowledge-Based Systems, Jun. 2018 [bibTex] [PDF]
, - LeanBench: comparing software stacks for batch and query processing of IoT data, presented at International Conference on Ambient Systems, Networks and Technologies (ANT), May. 2018 [bibTex]
, - Semiautomated Approach to the Specification and Resolution of Variability in Textual Requirements, presented at ICEIS'2018, Apr. 2018 [bibTex]
, - Specification of Personal Data Protection Requirements: Interpretation of Legal Requirements from the GDPR, presented at ICEIS'2018, Apr. 2018 [bibTex]
, - Towards a Test Specification Language for Information Systems: Focus on Data Entity and State Machine Tests, presented at MODELSWARD’2018, Feb. 2018 [bibTex]
, 2017
- Bringing Europeana and CLARIN together: Dissemination and exploitation of cultural heritage data in a research infrastructure, presented at Digital Infrastructures for Research 2017, Dec. 2017 [bibTex]
, - Building new knowledge from distributed scientific corpus: HERBADROP & EUROPEANA: Two concrete case studies for exploring big archival data, presented at 2017 IEEE International Conference on Big Data (Big Data), 2017, Dec. 2017 [DOI Article link] [bibTex]
, - Perspectives on using Schema.org for publishing and harvesting metadata at Europeana’ , presented at SWIB17 Semantic Web in Libraries Conference, Dec. 2017 [bibTex]
, - A Meta Model for Interoperability of Secure Business Transactions - Using BlockChain and DEMO, presented at Proceedings of the 9th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management (KEOD), Nov. 2017 [DOI Article link] [bibTex]
, - Dynamic Behavior Control of Interoperability: An Ontological Approach, presented at Proceedings of the 9th International Joint Conference on Knowledge Discovery, Knowledge Engineering and Knowledge Management, Nov. 2017 [DOI Article link] [bibTex]
, - Gelly-Scheduling: Distributed Graph Processing for Service Placement in Community Networks, presented at 33rd ACM/SIGAPP Symposium On Applied Computing (SAC 2018), Nov. 2017 [bibTex]
, - Data Quality Assessment in Europeana: Metrics for Multilinguality, presented at International Conference on Theory and Practice of Digital Libraries 2017, Sep. 2017 [bibTex]
, - Fuzzy Fingerprints for Item-Based Collaborative Filtering, presented at 10th Conference of the European Society for Fuzzy Logic and Technology - EUSFLAT2017, Sep. 2017 [bibTex]
, - Metadata Aggregation: Assessing the Application of IIIF and Sitemaps Within Cultural Heritage, presented at International Conference on Theory and Practice of Digital Libraries 2017, Sep. 2017 [bibTex]
, - Using Spark and GraphX to Parallelize Large-Scale Simulations of Bacterial Populations over Host Contact Networks, presented at International Conference on Algorithms and Architectures for Parallel Processing (ICA3PP'17), Sep. 2017 [DOI Article link] [bibTex]
, - Variability Aspects at a Textual Requirements Specification Level, presented at IEEE 25th International Requirements Engineering Conference Workshops, Sep. 2017 [bibTex]
, - A Deep Learning Method for ICD-10 Coding of Free-Text Death Certificates, presented at EPIA 2017: Progress in Artificial Intelligence, Aug. 2017 [DOI Article link] [bibTex]
, - Improving the Prediction of Functional Outcome in Ischemic Stroke Patients, presented at BIOKDD 2017, Aug. 2017 [bibTex] [PDF]
, - NGSPipes: Fostering Reproducibility and Scalability in Biosciences, presented at 8th International Conference on Bioinformatics, Computational Biology, and Health Informatics, Aug. 2017 [bibTex]
, - On-Demand Service-Based Big Data Integration: Optimized for Research Collaboration, presented at VLDB Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH), Aug. 2017 [bibTex] [PDF]
, - Towards distance-based phylogenetic inference in average-case linear-time, presented at WABI, Aug. 2017 [DOI Article link] [bibTex]
, - Umedicine: A System for Clinical Practice Support and Data Analysis, presented at VLDB Workshop on Data Management and Analytics for Medicine and Healthcare (DMAH), Aug. 2017 [bibTex]
, - Combining Ratings and Item Descriptions in Recommendation Systems
using Fuzzy Fingerprints, presented at FUZZ-IEEE, 2017 IEEE International Conference on Fuzzy Systems, Jul. 2017 [bibTex]
, - Forensic Analysis of Communication Records of Web-based MessagingApplications from Physical Memory., presented at The 14th International Conference on Security and Cryptography, Jul. 2017 [bibTex]
, - Linguistic Patterns and Linguistic Styles for Requirements Specification (I): An Application Case with the Rigorous RSL/Business-Level Language, presented at EuroPLOP’2017, Jul. 2017 [bibTex]
, - Locating and visualizing the most valuable business processes states in large control policy graphs produced by POMDP, presented at 19th IEEE Conference on Business Informatics (CBI), Jul. 2017 [DOI Article link] [bibTex]
, - NGLESS: A tool for perfectly understandable and reproducible metagenomics pipelines based on a domain-specific language, presented at ISMB BOSC 2017, Jul. 2017 [bibTex]
, - Using Spark and MapReduce to Parallelize Large Scale Simulations Over Host Contact Networks, Jul. 2017 [bibTex]
, - Cross-Domain Analogy: From Image to Music, presented at 5th International Workshop on Musical Metacreation, Jun. 2017 [bibTex]
, - DEMO Business Processes Design to Improve the Enterprise Business Continuity Plans, presented at Advances in Enterprise Engineering XI. EEWC 2017, Jun. 2017 [DOI Article link] [bibTex]
, - Designing a Decision-Making Process for Partially Observable Environments Using Markov Theory, presented at Enterprise, Business-Process and Information Systems Modeling, Jun. 2017 [DOI Article link] [bibTex]
, - Web technologies: a survey of their applicability to metadata aggregation in cultural heritage, presented at 21st International Conference on Electronic Publishing, Jun. 2017 [bibTex]
, - A test-suite diagnosability metric for spectrum-based fault localization approaches, presented at Proceedings of the 39th International Conference on Software Engineering (ICSE), May. 2017 [bibTex]
, - Developing a Mutually-Recognized Cross-Domain Study Program in Cyber-Physical Systems , presented at 8th IEEE Global Engineering Education Conference (EDUCON 2017), May. 2017 [DOI Article link] [bibTex]
, - Evaluating & improving fault localization techniques, presented at Proceedings of the 39th International Conference on Software Engineering (ICSE), May. 2017 [bibTex]
, - Leafactor: Improving energy efficiency of android apps via automatic refactoring, presented at 2017 IEEE/ACM 4th International Conference on Mobile Software Engineering and Systems (MOBILESoft), May. 2017 [bibTex]
, - Performance-based guidelines for energy efficient mobile applications, presented at 2017 IEEE/ACM 4th International Conference on Mobile Software Engineering and Systems (MOBILESoft), May. 2017 [bibTex]
, - Prevalence of single-fault fixes and its impact on fault localization, presented at IEEE International Conference on Software Testing, Verification and Validation (ICST), Apr. 2017 [bibTex]
, - RSLingo4Privacy Studio: A Tool to Improve the Specification and Analysis of Privacy Policies, presented at ICEIS'2017, Apr. 2017 [bibTex]
, - Emergence of social balance in signed networks, presented at CompleNet 2017, Mar. 2017 [DOI Article link] [bibTex]
, - XIS-Reverse: A Model-Driven Reverse Engineering Approach for Legacy Information Systems, presented at MODELSWARD’2017, Jan. 2017 [bibTex]
, National Conferences: 3
2018
- A Heterogeneidade na Representação da Informação Musical : Proposta de uma Ontologia para a Música, presented at 13º Congresso BAD, Oct. 2018 [bibTex]
, - Revisão Sistemática da Literatura sobre Ontologias Legais, presented at Conferência da Associação Portuguesa de Sistemas de Informação (CAPSI'2018), Sep. 2018 [bibTex]
, 2017
- ELIXIR Portugal: Platforms, Use Cases and Services, presented at Bioinformatics Open Day, Feb. 2017 [bibTex]
, National Journal Articles: 1
2017
- Cybersecurity: the role of informatics engineering, article in Revista da Ordem dos Engenheiros, May. 2017 [Article] [bibTex]
, Dissertations
PhD Theses: 1
2018
- Ana T. Freitas, Prospecção de genes aplicados à biodegradação de hidrocarbonetos e produção de surfactantes utilizando abordagens computacionais, PhD Thesis at University of Lisbon - IST, Apr. 2018 [bibTex]
advised by MSc Theses: 25
2018
- H. Sofia Pinto and Francisco S. Melo, Creating Recipes using Machine Learning and Computational Creativity , MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Oct. 2018 [bibTex]
advised by advised by 2017
advised by- Miguel Pardal and Helena Galhardas, Comparing software stacks for Big Data batch processing, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex]
advised by - Alberto Rodrigues da Silva, dDocs/Dashboards: Data Analytics for a Citizen-Centric Platform, MSc Thesis at IST-UL, Nov. 2017 [bibTex]
advised by - Mário J. Silva and Pável Calado, Emparelhamento de Dados Censitários, MSc Thesis, Nov. 2017 [bibTex] [PDF]
advised by - Alberto Rodrigues da Silva, Especificação rigorosa de requisitos de usabilidade para software, MSc Thesis at IST-UL, Nov. 2017 [bibTex]
advised by - Bruno Martins and David Martins de Matos, Geocodificação e Datação Automática de Obras Musicais com, Base no Conteúdo Áudio, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex]
advised by - Alberto Rodrigues da Silva, ITBox: A Collaborative Platform for Better Managing Technical Documentation, MSc Thesis, Nov. 2017 [bibTex]
advised by - Mário J. Silva and Pável Calado, Matching Census Data Records, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex] [PDF]
advised by - Alberto Rodrigues da Silva, ProjectLingo: Rigorous Specification of Project Plans, MSc Thesis at IST-UL, Nov. 2017 [bibTex]
advised by - Alberto Rodrigues da Silva, RSLingo-Studio: A Tool for Rigorous Requirements Specification, Validation and Transformation, MSc Thesis at IST-UL, Nov. 2017 [bibTex]
advised by - Mário J. Silva and Bruno Martins, Sleep Desorders Clinical Database, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex] [PDF]
advised by - Mário J. Silva and Bruno Martins, Sleep Desorders Clinical Database, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Nov. 2017 [bibTex] [PDF]
advised by - Daniel Simões Lopes and Joaquim Armando Pires Jorge, André Filipe Pinto Domingues , MSc Thesis at Universidade de Lisboa, Oct. 2017 [bibTex]
advised by - Mário J. Silva and Bruno Martins, Automated Classification of Causes of Mortality, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Oct. 2017 [bibTex]
advised by - Paolo Romano and Bruno Martins, Scalable and Memory-Efficient Approaches for Spatial Data Downscaling Leveraging Machine Learning, MSc Thesis at Ist, Lisbon University , Oct. 2017 [bibTex]
advised by - Pável Calado, Construção de Vizinhanças através da Popularidade de Itens em Métodos Colaborativos, MSc Thesis at Instituto Superior Técnico, Sep. 2017 [bibTex]
advised by - Mário J. Silva and Daniel Jorge Viegas Gonçalves, Análise e Visualização de Doenças Transmissíveis, MSc Thesis, Jul. 2017 [bibTex] [PDF]
advised by - Mário J. Silva and Bruno Martins, A Prototype Infrastructure for Sentinel Earth Observation Data Relative to Portugal, MSc Thesis at Instituto Superior Técnico, Universidade de Lisboa, Jun. 2017 [bibTex] [PDF]
advised by advised by - Helena Galhardas and João Carlos Serrenho Dias Pereira, Umedicine: A System for Clinical Practice Support and Data Analysis, MSc Thesis, May. 2017 [bibTex]
advised by - Helena Galhardas and João Carlos Serrenho Dias Pereira, Umedicine: Medical Data Visualization Module, MSc Thesis, May. 2017 [bibTex]
advised by - Alberto Rodrigues da Silva, XIS-Reverse: A Model-Driven Reverse Engineering Approach, MSc Thesis at IST-UL, May. 2017 [bibTex]
advised by advised by as Editors
Edited Proceedings: 1
2018
- Enterprise, Business-Process and Information Systems Modeling, LNBIP 318, Jun. 2018, Springer Verlag [bibTex]
, editors, Reports
Technical Reports: 6
2018
- A robust hierarchical nominal classification method based on similarity and dissimilarity, INESC-ID Tec. Rep. 5/2018, Nov. 2018 [bibTex] [PDF]
, - On-Demand Big Data Integration: A Hybrid ETL Approach for Reproducible Scientific Research, INESC-ID Tec. Rep. 3/2018, Apr. 2018 [bibTex]
, - Evaluation of Schema.org for Aggregation of Cultural Heritage Metadata, INESC-ID Tec. Rep. 1/2018, Jan. 2018 [bibTex] [PDF]
, 2017
- A Multiple Criteria Nominal Classification Method Based on the Concepts of Similarity and Dissimilarity, INESC-ID Tec. Rep. 7/2017, Aug. 2017 [bibTex] [PDF]
, - Gelly-Scheduling: Distributed Graph Processing for Network Service Placement, INESC-ID Tec. Rep. 4/2017, Feb. 2017 [bibTex]
, - A Multiple Criteria Nominal Classification Method Based on the Concepts of Similarity and Dissimilarity, INESC-ID Tec. Rep. 1/2017, Jan. 2017 [bibTex] [PDF]
,